New decade, new syllabi

We just kicked off the Spring semester here at Vassar College, and so I’ve got some freshly-updated bio-anthro syllabi hot off the press. This semester, I’m doing my annual introductory class (Anth 120, “Human Origins”), a resurrected seminar (Anth 305: “Human Evo-Devo”), and a second stab at a new methods module (Anth 211: “Virtual Anthropology”).

Anth 120 is similar to previous versions, although this year I’ve taken out a reading/lecture on Paleolithic technology, replaced with articles scrutinizing evolutionary psychology. We’ll see how it goes.

The other two classes are greatly overhauled from previous versions. Anth 211, “Virtual Anthropology,” is my first contribution to a new curricular initiative here at Vassar, which are called “intensives.” Anth 211 is kind of a hybrid between a regular class and an independent study, giving students experience with computer-based, “virtual” methods used in biological anthropology and related fields.  In the first half of the semester, students will get to try out some of these methods and see what kinds of research questions they’re used for. In the 2nd half of the term, students do their own Virtual Anthropology study drawing on the materials in my HEAD Lab, and then present a research poster at the end of the year. I debuted this intensive last Fall, and based on that experience I’m providing a bit more training and have more activities for students this Spring. If last semester’s projects are at all predictive, we should have some fun projects in store this year.

cropped-screen-shot-2020-01-19-at-1.30.37-pm.png

Anth 305 is a fossil-focused examination of the roles of growth and development in human evolution, and this year’s version is also highly modified from the last time I taught it over two years ago. In that first version, course content was patterned along the skeleton, e.g., one week looked at evolution and development of teeth, next week the spine, etc. Such a bauplan might work for building bodies, but it wasn’t the best for teaching. So this year, we’re spending the first few weeks on the fossil record of human evolution, getting acquainted with the curious characters of our deep past. From there, we go over skeletal / developmental biology, before delving into special evo-devo topics like “morphological integration” and “heterochrony” for the rest of the semester. We’ll also read lots of old, “classic” papers along the way.

Syllabi for these, and other classes, can be found on the teaching page of the site, if you want to learn more.

Osteology Everywhere: Ilium Nublar

Jurassic Park is objectively the greatest film ever made, so I don’t need to explain why I recently watched it for the bajillionth time. Despite having seen this empirically excellent movie countless times, I finally noticed something I’d never seen before.

Hold on to your butts. What's that on the screen in front of Ray Arnold?

Hold on to your butts – what’s that on the screen in front of John Arnold? (image credit)

The film takes place on the fictitious island “Isla Nublar,” a map of which features prominently in the computer control room when s**t starts to go down. Here’s a clearer screenshot of one of Dennis Nedry‘s monitors:

Isla Nublar from the JP control room. Quiet, all of you! They’re approaching the tyrannosaur paddock…. (image credit)

It dawned on me that the inspiration for this island is none other than MLD 7, a juvenile Australopithecus africanus ilium from the Makapansgat site in South Africa:

Figure 1 from Dart, 1958. Left side is MLD 7 and right is MLD 25. Top row is the lateral view (from the side) and bottom row is the medial view (from the inside).

Figure 1 from Dart, 1958. Left side is MLD 7 and right is MLD 25. Top row is the lateral view (from the side) and bottom row is the medial view (from the inside). These two hip bones are from the left side of the body (see the pelvis figure in this post). Note the prominent anterior inferior iliac spine on MLD 7, a quintessential feature of bipeds.

Isla Nublar is basically MLD 7 viewed at an angle so that appears relatively narrower from side to side:

MLD at a slightly oblique view (or stretched top to bottom) magically transforms into Isla Nublar.

MLD 7 at a slightly oblique view (or stretched top to bottom) magically transforms into Isla Nublar.

It’s rather remarkable that some of the most complete pelvic remains we have for australopithecines are two juveniles of similar developmental ages and sizes from the same site. In both, the iliac crest is not fused, and joints of the acetabulum (hip socket) hadn’t fused together yet. The immaturity of these two fossils matches what is seen prior to puberty in humans and chimpanzees. Berge (1998) also noted that MLD 7, serving as an archetype for juvenile Australopithecus, is similar in shape to juvenile humans, whereas adult Australopithecus (represented by Sts 14 and AL 288) are much flatter and wider side to side. Berge took this pattern of ontogenetic variation to match an ape-like pattern of ilium shape growth. This suggests a role of heterochrony in the evolution of human pelvic shape, or as Berge (1998: 451) put it, “Parallel change in pelvic shape between human ontogeny and hominid phylogeny.” In layman’s terms, ‘similar changes in both pelvic growth and pelvis evolution.’

Evo-devo of the human shoulder?

It’s a new year, and while my mind should be marred by a hangover, instead all I can think about are fossils and scapulas.


A pretty cool study was published online in the Journal of Human Evolution last week, and I’ve finally gotten to peruse it. Fabio Di Vincenzo and colleagues analyzed the shape of the outline of the glenoid fossa on the scapula (not to be confused with the glenoid on your skull), from Australopithecus africanus to present day humans. The glenoid fossa is essentially the socket in the ball-and-socket joint of your shoulder. The authors found that there is pretty much a single trend of glenoid shape change from Australopithecus through the evolution of the genus Homo: from the fairly narrow joint in Australopithecus africanus and A. sediba, to the relatively wide joint in recent humans. The overall size and shape of the joint influences/reflects shoulder mobility, so presumably this shape change hints that more front-to-back arm motions became more important through the course of human evolution (authors suggest throwing in humans from the Late Pleistocene onward).



The finding of a single predominant trend in glenoid shape evolution is pretty interesting. On top of that, the authors add an ‘evo-devo’ twist by comparing species’ average “shapes” (first principle component scores, on the y-axis in the figure at right) with their estimated ages at skeletal maturity (which appears scaled to the modern human value, on the x-axis). Though it’s not an ideal dataset for running a linear regression, the figure at right shows that there appears to be a fairly linear relationship across human evolution, such that groups with an older age at skeletal maturity tend to have a more rounded (modern human-like) glenoid fossa (note that the individuals in the analysis were all adults). Overall size does not contribute to shape variation among these glenoids.


This work raises two issues, and ultimately leads to a testable evo-devo hypothesis. The first issue is to what extent we can trust their estimates of age at skeletal maturity. These estimates were allegedly taken from a chapter by Helmut Hemmer (2007) in the prohibitively expensive Handbook of Paleoanthropology. Cursorily glancing at this chapter, I can’t find age at skeletal maturation estimated for any hominids. It is possible that in my skimming I missed the estimates, or alternatively that Di Vincenzo and colleagues misinterpreted another variable as skeletal development. Either way, these estimates would still need to be taken with a grain of salt, given that it is almost impossible to know the true age at death of a fossil (but see Antoine et al. 2008), especially if there are no associated cranio-dental elements.


That said, it is perfectly reasonable to suppose that the age at skeletal maturation has increased over the course of human evolution; life-span increased through human evolution, and so all else being equal (which it almost certainly isn’t) we could expect that maturation would occur later over time, too. So this leads to a second issue: given the “evo-devo change” the authors hypothesize, what is the evo-devo mechanism? That is, how was development modified to effect the evolutionary changes we see in the hominid scapula? Because they found adult glenoid shape correlates with estimated age at skeletal maturity, this leads to the hypothesis that postnatal skeletal growth accounts for the shape difference. Indeed, they state:

“If functional and static allometric influences are unlikely, we…interpret the trend…as reflecting growth and developmental factors. A major, albeit gradual, trend of ontogenetic heterochrony occurred in the evolution of the genus Homo… and thus differences within and between taxa in overall growth rates may have produced the pattern of variation between samples, as well as the overall temporal trend observed. The regression of life history variables [they only looked at 1]… with PCA [principle components analysis] scores supports this ‘ontogenetic’ hypothesis.”

The authors suggest that humans’ slower growth rates but longer growth period “led to longer periods of bone deposition along the inferior-lateral edge of the [glenoid fossa]”  The heterochronic process they suggest is “peramorphosis” – the descendant reaches a shape that is ‘beyond’ that of the ancestor.

The figure above is from a seminal “heterochrony” paper by Pere Alberch and colleagues (1979), portraying how peramorphosis can occur. In each, the y-axis represents shape and the x-axis is age. A the descendant’s peramorphic shape (“Ya”) could result from accelerated growth (left graph) or from an extension of growth to later ages than in the ancestor (right graph).


And so this leads to a testable hypothesis. Di Vincenzo and colleagues cite (dental) evidence that humans’ overall body growth rates are slower than earlier hominids’, undermining the hypothesis that acceleration is responsible for humans’ glenoid peramorphosis. Rather, they hypothesize that humans’ slower growth rates coupled with a longer period of skeletal development, to result in a relatively wider glenoid, due to increased development of the secondary growth centers (e.g. the graph at right, above). This developmental scenario predicts that subadult human glenoids should resemble earlier hominid adults’, that “ontogeny recapitulates phylogeny” as far as glenoid shape is concerned. Analyzing glenoid growth can even be extended to include fossils – the >3 million year old human ancestor Australopithecus afarensis has glenoids preserved for an infant (DIK-VP-1; Alemseged et al. 2006) and 2 adults (AL 288 “Lucy” and KSD-VP-1; Johanson et al. 1982, Haile-Selassie et al. 2010). An alternate hypothesis is that species’ distinct glenoid shapes are established early during life (i.e. in utero), and/or that no simple heterochronic process is involved.


ResearchBlogging.orgDi Vincenzo’s and colleagues’ study points to the importance of development in understanding human evolution, and their hypothesized “evo-devo change” in glenoid shape is ripe for testing.


References
Pere Alberch, Stephen Jay Gould, George F. Oster, & David B. Wake (1979). Size and shape in ontogeny and phylogeny Paleobiology, 5 (3), 296-317


Alemseged, Z., Spoor, F., Kimbel, W., Bobe, R., Geraads, D., Reed, D., & Wynn, J. (2006). A juvenile early hominin skeleton from Dikika, Ethiopia Nature, 443 (7109), 296-301 DOI: 10.1038/nature05047


Antoine, D., Hillson, S., & Dean, M. (2009). The developmental clock of dental enamel: a test for the periodicity of prism cross-striations in modern humans and an evaluation of the most likely sources of error in histological studies of this kind Journal of Anatomy, 214 (1), 45-55 DOI: 10.1111/j.1469-7580.2008.01010.x


Di Vincenzo, F., Churchill, S., & Manzi, G. (2011). The Vindija Neanderthal scapular glenoid fossa: Comparative shape analysis suggests evo-devo changes among Neanderthals Journal of Human Evolution DOI: 10.1016/j.jhevol.2011.11.010


Haile-Selassie, Y., Latimer, B., Alene, M., Deino, A., Gibert, L., Melillo, S., Saylor, B., Scott, G., & Lovejoy, C. (2010). An early Australopithecus afarensis postcranium from Woranso-Mille, Ethiopia Proceedings of the National Academy of Sciences, 107 (27), 12121-12126 DOI: 10.1073/pnas.1004527107


Hemmer, Helmut (2007). Estimation of Basic Life History Data of Fossil Hominoids Handbook of Paleoanthropology, 587-619 DOI: 10.1007/978-3-540-33761-4_19


Johanson, D., Lovejoy, C., Kimbel, W., White, T., Ward, S., Bush, M., Latimer, B., & Coppens, Y. (1982). Morphology of the Pliocene partial hominid skeleton (A.L. 288-1) from the Hadar formation, Ethiopia American Journal of Physical Anthropology, 57, 403-451 DOI: 10.1002/ajpa.1330570403

Atavisms: talk about old school

This month’s Current Biology has a “Quick Guide” segment by Brian Hall on atavisms: the occasional and random appearance of ancestral traits in individuals of species that no longer have that trait. Examples Hall provides are vestigial hindlimbs (legs or fins) occasionally found on dolphins or snakes, which evolved from animals that did have limbs.

This is wild, because it implies that part of the ancestor’s developmental program has been furtively retained in its descendants, but this program generally never gets carried out. But every now and again a mutation may arise that causes the ancestor’s developmental program come alive all Franken-style. Nuts!
Here’s a crazy hypothetical example: the axolotl is an evolutionary abomination, a salamander in a state of arrested development. It’s basically a salamander that terminates development in what would otherwise be the larval stage of any other salamander. This is a nice real-life example of heterochrony (changes in the timing and rates of developmental events). Here, it’s a adult descendant that resembles the juvenile form of the ancestor (“neoteny”). (photo credit: John Clare, axolotl.org)
Wouldn’t it be wild, then, if the there was an axolotl in whom the ancestral full-salamander developmental plan was completed, resulting in an accidental salamander?! And then you could try to select for this atavism, possibly breeding peramorphic-atavistic-salamander axolotls (“salamander axolotls” for short)! If grad school doesn’t work out, this’ll be my Plan B.
Poll: If you could have any atavism, what would it be?
Reference
Hall BK. 2010. Quick guide: Atavisms. Current Biology 20: R871.